Files
pygeoapi/docs/source/plugins.rst
T
Richard Law 60202129ec implement processing manager (#365)
* add process manager

* process manager updating

* control connectivity from inside manager

* missing method on execute_process function signature

* adds tinydb depenedency for requirements-provider

* adds some processes tests

* process manager under server config, not a process

* additional html rendering for jobs and processes

* fixes typo in docstring

* complete html templating for jobs and processes

* considers timezone when formatting processing start/end datetimes

* expanded locales; locale and tz environment variables

* makes environment TZ a global from pygeoapi/__init__.py

* don't redefine built-in format

* adds placeholder values in process form if given as examples

* placeholder in form handles null example

* changes to process progress update

* updates and changes to processing web UI

* adds python3-distutils dep, and env changes for TZs and locales

* adds tinydb dependency for processes

* Adds libpq-dev and related deps for processing - should eventually be reconciled

* minor margin change

* fix bug in postJob.js that prevented results from displaying

* move process elements around to economise on space

* adds second, complex process

* post data may be bytes

* make external process example

* adds redis process manager (may be moved to third-party plugin eventually)

* reintroduce default async processing; refactoring managers; improving sync/async processing ui

* throw pygeoapi ManagerExecuteError, not redis exception

* adds test for async-execute

* restores original test host

* separates async execute handler function

* adds support for file uploads as processing inputs

* adds endpoint for file download as process output

* naming consistency

* Fix job submission form in case server url is relative (#549)

`new URL()` fails if the first argument isn't a complete url

* Implement job deletion in UI, api and tinydb

* Also allow deletion from job list

The UI could be fancier by reloading the page or just removing the
deleted job right away, but I don't want to start building that now.

* Delete output file when deleting a job

* typo in test case

* move delete button in job view

* remove Dockerfile changes (cf #470)

* removes some docs/source*.rst absent in master

* fixes whitespace

* fixes pip installs

* removes more locale-specific content, cf 70

* fixes duplicate app following merge

* removes redis as default plugin

* removes ENV_TZ, cf #407

* fix typo

* fixes syntax error

* process execution test cleanup

* Fix format detection in execute_process (#589)

Before, html was always selected.

* remove db files in code directories, fix flake8, specific functionality

* remove interactive capabilities in lieu of Swagger

* Add basic openapi documentation for job detail endpoint (#590)

It's somewhat superficial still, e.g. jobId is missing as
proper parameter in the UI.

* Show elapsed time for currently running jobs (#591)

* flake8, jobs workflow

* update docs, DB path in test config

* more code cleanup

* manager workflow cleanup

* add default dummy manager

* update docs

* fix routes

* fixed per comments

* fix per comments

* fix per comments

* fix travis

* simply describe process logic

* simplify describe process logic

Co-authored-by: Tom Kralidis <tomkralidis@gmail.com>
Co-authored-by: Jorge de Jesus <jorge.jesus@gmail.com>
Co-authored-by: totycro <bernhard.mallinger@eox.at>
Co-authored-by: Richard Law <richard.law@cartoncloud.com.au>
2020-12-22 06:53:31 -05:00

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.. _plugins:
Customizing pygeoapi: plugins
=============================
In this section we will explain how pygeoapi provides plugin architecture for data providers, formatters and processes.
Plugin development requires knowledge of how to program in Python as well as Python's package/module system.
Overview
--------
pygeoapi provides a robust plugin architecture that enables developers to extend functionality. Infact,
pygeoapi itself implements numerous formats, data providers and the process functionality as plugins.
The pygeoapi architecture supports the following subsystems:
- data providers
- output formats
- processes
The core pygeoapi plugin registry can be found in ``pygeoapi.plugin.PLUGINS``.
Each plugin type implements its relevant base class as the API contract:
- data providers: ``pygeoapi.provider.base``
- output formats: ``pygeoapi.formatter.base``
- processes: ``pygeoapi.process.base``
.. todo:: link PLUGINS to API doc
Plugins can be developed outside of the pygeoapi codebase and be dynamically loaded
by way of the pygeoapi configuration. This allows your custom plugins to live outside
pygeoapi for easier maintenance of software updates.
.. note::
It is recommended to store pygeoapi plugins outside of pygeoapi for easier software
updates and package management
Example: custom pygeoapi vector data provider
---------------------------------------------
Lets consider the steps for a vector data provider plugin (source code is located here: :ref:`data Provider`).
Python code
^^^^^^^^^^^
The below template provides a minimal example (let's call the file ``mycoolvectordata.py``:
.. code-block:: python
from pygeoapi.provider.base import BaseProvider
class MyCoolVectorDataProvider(BaseProvider):
"""My cool vector data provider"""
def __init__(self, provider_def):
"""Inherit from parent class"""
super().__init__(provider_def)
def get_fields(self):
# open dat file and return fields and their datatypes
return {
'field1': 'string',
'field2': 'string'
}
def query(self,startindex=0, limit=10, resulttype='results',
bbox=[], datetime_=None, properties=[], sortby=[],
select_properties=[], skip_geometry=False):
# open data file (self.data) and process, return
return {
'type': 'FeatureCollection',
'features': [{
'type': 'Feature',
'id': '371',
'geometry': {
'type': 'Point',
'coordinates': [ -75, 45 ]
},
'properties': {
'stn_id': '35',
'datetime': '2001-10-30T14:24:55Z',
'value': '89.9'
}
}]
}
For brevity, the above code will always return the single feature of the dataset. In reality, the plugin
developer would connect to a data source with capabilities to run queries and return a relevant result set,
as well as implement the ``get`` method accordingly. As long as the plugin implements the API contract of
its base provider, all other functionality is left to the provider implementation.
Each base class documents the functions, arguments and return types required for implementation.
Connecting to pygeoapi
^^^^^^^^^^^^^^^^^^^^^^
The following methods are options to connect the plugin to pygeoapi:
**Option 1**: Update in core pygeoapi:
- copy ``mycoolvectordata.py`` into ``pygeoapi/provider``
- update the plugin registry in ``pygeoapi/plugin.py:PLUGINS['provider']`` with the plugin's
shortname (say ``MyCoolVectorData``) and dotted path to the class (i.e. ``pygeoapi.provider.mycoolvectordata.MyCoolVectorDataProvider``)
- specify in your dataset provider configuration as follows:
.. code-block:: yaml
providers:
- type: feature
name: MyCoolVectorData
data: /path/to/file
id_field: stn_id
**Option 2**: implement outside of pygeoapi and add to configuration (recommended)
- create a Python package of the ``mycoolvectordata.py`` module (see `Cookiecutter`_ as an example)
- install your Python package onto your system (``python setup.py install``). At this point your new package
should be in the ``PYTHONPATH`` of your pygeoapi installation
- specify in your dataset provider configuration as follows:
.. code-block:: yaml
providers:
- type: feature
name: mycooldatapackage.mycoolvectordata.MyCoolVectorDataProvider
data: /path/to/file
id_field: stn_id
BEGIN
Example: custom pygeoapi raster data provider
---------------------------------------------
Lets consider the steps for a raster data provider plugin (source code is located here: :ref:`data Provider`).
Python code
^^^^^^^^^^^
The below template provides a minimal example (let's call the file ``mycoolrasterdata.py``:
.. code-block:: python
from pygeoapi.provider.base import BaseProvider
class MyCoolRasterDataProvider(BaseProvider):
"""My cool raster data provider"""
def __init__(self, provider_def):
"""Inherit from parent class"""
super().__init__(provider_def)
self.num_bands = 4
self.axes = ['Lat', 'Long']
def get_coverage_domainset(self):
# return a CIS JSON DomainSet
def get_coverage_rangetype(self):
# return a CIS JSON RangeType
def query(self, bands=[], subsets={}, format_='json'):
# process bands and subsets parameters
# query/extract coverage data
if format_ == 'json':
# return a CoverageJSON representation
return {'type': 'Coverage', ...} # trimmed for brevity
else:
# return default (likely binary) representation
return bytes(112)
For brevity, the above code will always JSON for metadata and binary or CoverageJSON for the data. In reality, the plugin
developer would connect to a data source with capabilities to run queries and return a relevant result set,
As long as the plugin implements the API contract of its base provider, all other functionality is left to the provider
implementation.
Each base class documents the functions, arguments and return types required for implementation.
END
Example: custom pygeoapi formatter
----------------------------------
Python code
^^^^^^^^^^^
The below template provides a minimal example (let's call the file ``mycooljsonformat.py``:
.. code-block:: python
import json
from pygeoapi.formatter.base import BaseFormatter
class MyCoolJSONFormatter(BaseFormatter):
"""My cool JSON formatter"""
def __init__(self, formatter_def):
"""Inherit from parent class"""
super().__init__({'name': 'cooljson', 'geom': None})
self.mimetype = 'text/json; subtype:mycooljson'
def write(self, options={}, data=None):
"""custom writer"""
out_data {'rows': []}
for feature in data['features']:
out_data.append(feature['properties'])
return out_data
Processing plugins
------------------
Processing plugins are following the OGC API - Processes development. Given that the specification is
under development, the implementation in ``pygeoapi/process/hello_world.py`` provides a suitable example
for the time being.
.. _`Cookiecutter`: https://github.com/audreyr/cookiecutter-pypackage