da824fba8f
* add support for OGC API - Coverages * fix coverage CRS ref * fix ref to OACov schemas for testing * move spectral testing to after_success * update docs * add mask param to rasterio provider
729 lines
29 KiB
Python
729 lines
29 KiB
Python
# =================================================================
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#
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# Authors: Tom Kralidis <tomkralidis@gmail.com>
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#
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# Copyright (c) 2020 Tom Kralidis
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#
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# Permission is hereby granted, free of charge, to any person
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# obtaining a copy of this software and associated documentation
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# files (the "Software"), to deal in the Software without
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# restriction, including without limitation the rights to use,
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# copy, modify, merge, publish, distribute, sublicense, and/or sell
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# copies of the Software, and to permit persons to whom the
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# Software is furnished to do so, subject to the following
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# conditions:
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#
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# The above copyright notice and this permission notice shall be
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# included in all copies or substantial portions of the Software.
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#
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# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
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# OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
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# HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
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# WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
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# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
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# OTHER DEALINGS IN THE SOFTWARE.
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#
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# =================================================================
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from copy import deepcopy
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import logging
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import os
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import click
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import yaml
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from pygeoapi.plugin import load_plugin
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from pygeoapi.provider.base import ProviderTypeError
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from pygeoapi.util import (filter_dict_by_key_value, get_provider_by_type,
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yaml_load)
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LOGGER = logging.getLogger(__name__)
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OPENAPI_YAML = {
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'oapif': 'http://schemas.opengis.net/ogcapi/features/part1/1.0/openapi/ogcapi-features-1.yaml', # noqa
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'oapip': 'https://raw.githubusercontent.com/opengeospatial/wps-rest-binding/master/core/openapi', # noqa
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# 'oacov': 'https://raw.githubusercontent.com/opengeospatial/OGC-API-Sprint-August-2020/master/docs/Draft_Spring_Guide_for_OGC_API_Coverages/openapi' # noqa
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'oacov': 'https://raw.githubusercontent.com/tomkralidis/ogcapi-coverages-1/fix-cis/yaml-unresolved' # noqa
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}
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def get_ogc_schemas_location(server_config):
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osl = server_config.get('ogc_schemas_location', None)
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value = 'http://schemas.opengis.net'
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if osl is not None:
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if osl.startswith('http'):
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value = osl
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elif osl.startswith('/'):
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value = os.path.join(server_config['url'], 'schemas')
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return value
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# TODO: remove this function once OGC API - Processing is final
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def gen_media_type_object(media_type, api_type, path):
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"""
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Generates an OpenAPI Media Type Object
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:param media_type: MIME type
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:param api_type: OGC API type
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:param path: local path of OGC API parameter or schema definition
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:returns: `dict` of media type object
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"""
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ref = '{}/{}'.format(OPENAPI_YAML[api_type], path)
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content = {
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media_type: {
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'schema': {
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'$ref': ref
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}
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}
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}
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return content
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# TODO: remove this function once OGC API - Processing is final
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def gen_response_object(description, media_type, api_type, path):
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"""
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Generates an OpenAPI Response Object
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:param description: text description of response
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:param media_type: MIME type
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:param api_type: OGC API type
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:returns: `dict` of response object
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"""
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response = {
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'description': description,
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'content': gen_media_type_object(media_type, api_type, path)
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}
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return response
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def get_oas_30(cfg):
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"""
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Generates an OpenAPI 3.0 Document
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:param cfg: configuration object
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:returns: OpenAPI definition YAML dict
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"""
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paths = {}
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osl = get_ogc_schemas_location(cfg['server'])
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OPENAPI_YAML['oapif'] = os.path.join(osl, 'ogcapi/features/part1/1.0/openapi/ogcapi-features-1.yaml') # noqa
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LOGGER.debug('setting up server info')
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oas = {
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'openapi': '3.0.2',
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'tags': []
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}
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info = {
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'title': cfg['metadata']['identification']['title'],
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'description': cfg['metadata']['identification']['description'],
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'x-keywords': cfg['metadata']['identification']['keywords'],
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'termsOfService':
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cfg['metadata']['identification']['terms_of_service'],
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'contact': {
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'name': cfg['metadata']['provider']['name'],
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'url': cfg['metadata']['provider']['url'],
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'email': cfg['metadata']['contact']['email']
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},
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'license': {
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'name': cfg['metadata']['license']['name'],
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'url': cfg['metadata']['license']['url']
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},
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'version': '3.0.2'
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}
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oas['info'] = info
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oas['servers'] = [{
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'url': cfg['server']['url'],
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'description': cfg['metadata']['identification']['description']
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}]
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paths['/'] = {
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'get': {
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'summary': 'Landing page',
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'description': 'Landing page',
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'tags': ['server'],
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'operationId': 'getLandingPage',
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'parameters': [
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{'$ref': '#/components/parameters/f'}
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],
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'responses': {
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'200': {'$ref': '{}#/components/responses/LandingPage'.format(OPENAPI_YAML['oapif'])}, # noqa
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'400': {'$ref': '{}#/components/responses/InvalidParameter'.format(OPENAPI_YAML['oapif'])}, # noqa
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'500': {'$ref': '{}#/components/responses/ServerError'.format(OPENAPI_YAML['oapif'])} # noqa
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}
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}
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}
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paths['/openapi'] = {
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'get': {
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'summary': 'This document',
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'description': 'This document',
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'tags': ['server'],
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'operationId': 'getOpenapi',
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'parameters': [
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{'$ref': '#/components/parameters/f'}
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],
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'responses': {
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'200': {'$ref': '#/components/responses/200'},
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'400': {'$ref': '{}#/components/responses/InvalidParameter'.format(OPENAPI_YAML['oapif'])}, # noqa
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'default': {'$ref': '#/components/responses/default'}
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}
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}
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}
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paths['/conformance'] = {
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'get': {
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'summary': 'API conformance definition',
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'description': 'API conformance definition',
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'tags': ['server'],
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'operationId': 'getConformanceDeclaration',
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'parameters': [
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{'$ref': '#/components/parameters/f'}
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],
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'responses': {
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'200': {'$ref': '{}#/components/responses/ConformanceDeclaration'.format(OPENAPI_YAML['oapif'])}, # noqa
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'400': {'$ref': '{}#/components/responses/InvalidParameter'.format(OPENAPI_YAML['oapif'])}, # noqa
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'500': {'$ref': '{}#/components/responses/ServerError'.format(OPENAPI_YAML['oapif'])} # noqa
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}
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}
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}
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paths['/collections'] = {
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'get': {
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'summary': 'Collections',
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'description': 'Collections',
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'tags': ['server'],
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'operationId': 'getCollections',
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'parameters': [
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{'$ref': '#/components/parameters/f'}
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],
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'responses': {
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'200': {'$ref': '{}#/components/responses/Collections'.format(OPENAPI_YAML['oapif'])}, # noqa
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'400': {'$ref': '{}#/components/responses/InvalidParameter'.format(OPENAPI_YAML['oapif'])}, # noqa
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'500': {'$ref': '{}#/components/responses/ServerError'.format(OPENAPI_YAML['oapif'])} # noqa
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}
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}
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}
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oas['tags'].append({
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'name': 'server',
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'description': cfg['metadata']['identification']['description'],
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'externalDocs': {
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'description': 'information',
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'url': cfg['metadata']['identification']['url']}
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}
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)
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oas['tags'].append({
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'name': 'stac',
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'description': 'SpatioTemporal Asset Catalog'
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}
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)
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oas['components'] = {
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'responses': {
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'200': {
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'description': 'successful operation',
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},
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'default': {
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'description': 'Unexpected error',
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'content': gen_media_type_object('application/json', 'oapip', 'schemas/exception.yaml') # noqa
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},
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'Queryables': {
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'description': 'successful queryables operation',
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'content': {
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'application/json': {
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'schema': {'$ref': '#/components/schemas/queryables'}
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}
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}
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}
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},
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'parameters': {
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'f': {
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'name': 'f',
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'in': 'query',
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'description': 'The optional f parameter indicates the output format which the server shall provide as part of the response document. The default format is GeoJSON.', # noqa
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'required': False,
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'schema': {
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'type': 'string',
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'enum': ['json', 'html', 'jsonld'],
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'default': 'json'
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},
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'style': 'form',
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'explode': False
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},
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'sortby': {
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'name': 'sortby',
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'in': 'query',
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'description': 'The optional sortby parameter indicates the sort property and order on which the server shall present results in the response document using the convention `sortby=PROPERTY:X`, where `PROPERTY` is the sort property and `X` is the sort order (`A` is ascending, `D` is descending). Sorting by multiple properties is supported by providing a comma-separated list.', # noqa
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'required': False,
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'schema': {
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'type': 'string',
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},
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'style': 'form',
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'explode': False
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},
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'startindex': {
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'name': 'startindex',
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'in': 'query',
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'description': 'The optional startindex parameter indicates the index within the result set from which the server shall begin presenting results in the response document. The first element has an index of 0 (default).', # noqa
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'required': False,
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'schema': {
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'type': 'integer',
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'minimum': 0,
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'default': 0
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},
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'style': 'form',
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'explode': False
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}
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},
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'schemas': {
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# TODO: change this schema once OGC will definitively publish it
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'queryable': {
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'type': 'object',
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'required': [
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'queryable',
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'type'
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],
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'properties': {
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'queryable': {
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'description': 'the token that may be used in a CQL predicate', # noqa
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'type': 'string'
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},
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'title': {
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'description': 'a human readable title for the queryable', # noqa
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'type': 'string'
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},
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'description': {
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'description': 'a human-readable narrative describing the queryable', # noqa
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'type': 'string'
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},
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'language': {
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'description': 'the language used for the title and description', # noqa
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'type': 'string',
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'default': [
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'en'
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]
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},
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'type': {
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'description': 'the data type of the queryable', # noqa
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'type': 'string'
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},
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'type-ref': {
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'description': 'a reference to the formal definition of the type', # noqa
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'type': 'string',
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'format': 'url'
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}
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}
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},
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'queryables': {
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'type': 'object',
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'required': [
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'queryables'
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],
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'properties': {
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'queryables': {
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'type': 'array',
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'items': {'$ref': '#/components/schemas/queryable'}
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}
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}
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}
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}
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}
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items_f = deepcopy(oas['components']['parameters']['f'])
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items_f['schema']['enum'].append('csv')
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LOGGER.debug('setting up datasets')
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collections = filter_dict_by_key_value(cfg['resources'],
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'type', 'collection')
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for k, v in collections.items():
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collection_name_path = '/collections/{}'.format(k)
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tag = {
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'name': k,
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'description': v['description'],
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'externalDocs': {}
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}
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for link in v['links']:
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if link['type'] == 'information':
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tag['externalDocs']['description'] = link['type']
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tag['externalDocs']['url'] = link['url']
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break
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if len(tag['externalDocs']) == 0:
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del tag['externalDocs']
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oas['tags'].append(tag)
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paths[collection_name_path] = {
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'get': {
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'summary': 'Get collection metadata'.format(v['title']), # noqa
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'description': v['description'],
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'tags': [k],
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'operationId': 'describe{}Collection'.format(k.capitalize()),
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'parameters': [
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{'$ref': '#/components/parameters/f'}
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],
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'responses': {
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'200': {'$ref': '{}#/components/responses/Collection'.format(OPENAPI_YAML['oapif'])}, # noqa
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'400': {'$ref': '{}#/components/responses/InvalidParameter'.format(OPENAPI_YAML['oapif'])}, # noqa
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'404': {'$ref': '{}#/components/responses/NotFound'.format(OPENAPI_YAML['oapif'])}, # noqa
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'500': {'$ref': '{}#/components/responses/ServerError'.format(OPENAPI_YAML['oapif'])} # noqa
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}
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}
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}
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LOGGER.debug('setting up feature endpoints')
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try:
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p = load_plugin('provider', get_provider_by_type(
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collections[k]['providers'], 'feature'))
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items_path = '{}/items'.format(collection_name_path)
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paths[items_path] = {
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'get': {
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'summary': 'Get {} items'.format(v['title']),
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'description': v['description'],
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'tags': [k],
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'operationId': 'get{}Features'.format(k.capitalize()),
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'parameters': [
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items_f,
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{'$ref': '{}#/components/parameters/bbox'.format(OPENAPI_YAML['oapif'])}, # noqa
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{'$ref': '{}#/components/parameters/limit'.format(OPENAPI_YAML['oapif'])}, # noqa
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{'$ref': '#/components/parameters/sortby'},
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{'$ref': '#/components/parameters/startindex'}
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],
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'responses': {
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'200': {'$ref': '{}#/components/responses/Features'.format(OPENAPI_YAML['oapif'])}, # noqa
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'400': {'$ref': '{}#/components/responses/InvalidParameter'.format(OPENAPI_YAML['oapif'])}, # noqa
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'404': {'$ref': '{}#/components/responses/NotFound'.format(OPENAPI_YAML['oapif'])}, # noqa
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'500': {'$ref': '{}#/components/responses/ServerError'.format(OPENAPI_YAML['oapif'])} # noqa
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}
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}
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}
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if p.fields:
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queryables_path = '{}/queryables'.format(collection_name_path)
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paths[queryables_path] = {
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'get': {
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'summary': 'Get {} queryables'.format(v['title']),
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'description': v['description'],
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'tags': [k],
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'operationId': 'get{}Queryables'.format(
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k.capitalize()),
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'parameters': [
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items_f,
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],
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'responses': {
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'200': {'$ref': '#/components/responses/Queryables'}, # noqa
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'400': {'$ref': '{}#/components/responses/InvalidParameter'.format(OPENAPI_YAML['oapif'])}, # noqa
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'404': {'$ref': '{}#/components/responses/NotFound'.format(OPENAPI_YAML['oapif'])}, # noqa
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'500': {'$ref': '{}#/components/responses/ServerError'.format(OPENAPI_YAML['oapif'])} # noqa
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}
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}
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}
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if p.time_field is not None:
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paths[items_path]['get']['parameters'].append(
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{'$ref': '{}#/components/parameters/datetime'.format(OPENAPI_YAML['oapif'])}) # noqa
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for field, type in p.fields.items():
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if p.properties and field not in p.properties:
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LOGGER.debug('Provider specified not to advertise property') # noqa
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continue
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if type == 'date':
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schema = {
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'type': 'string',
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'format': 'date'
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}
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elif type == 'float':
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schema = {
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'type': 'number',
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'format': 'float'
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}
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elif type == 'long':
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schema = {
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'type': 'integer',
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'format': 'int64'
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}
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else:
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schema = {
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'type': type
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}
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path_ = '{}/items'.format(collection_name_path)
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paths['{}'.format(path_)]['get']['parameters'].append({
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'name': field,
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'in': 'query',
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'required': False,
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'schema': schema,
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'style': 'form',
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'explode': False
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})
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paths['{}/items/{{featureId}}'.format(collection_name_path)] = {
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'get': {
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'summary': 'Get {} item by id'.format(v['title']),
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'description': v['description'],
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'tags': [k],
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'operationId': 'get{}Feature'.format(k.capitalize()),
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'parameters': [
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{'$ref': '{}#/components/parameters/featureId'.format(OPENAPI_YAML['oapif'])}, # noqa
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{'$ref': '#/components/parameters/f'}
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],
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'responses': {
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'200': {'$ref': '{}#/components/responses/Feature'.format(OPENAPI_YAML['oapif'])}, # noqa
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'400': {'$ref': '{}#/components/responses/InvalidParameter'.format(OPENAPI_YAML['oapif'])}, # noqa
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'404': {'$ref': '{}#/components/responses/NotFound'.format(OPENAPI_YAML['oapif'])}, # noqa
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'500': {'$ref': '{}#/components/responses/ServerError'.format(OPENAPI_YAML['oapif'])} # noqa
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}
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}
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}
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except ProviderTypeError:
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LOGGER.debug('collection is not feature based')
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|
LOGGER.debug('setting up coverage endpoints')
|
|
try:
|
|
load_plugin('provider', get_provider_by_type(
|
|
collections[k]['providers'], 'coverage'))
|
|
|
|
coverage_path = '{}/coverage'.format(collection_name_path)
|
|
|
|
paths[coverage_path] = {
|
|
'get': {
|
|
'summary': 'Get {} coverage'.format(v['title']),
|
|
'description': v['description'],
|
|
'tags': [k],
|
|
'operationId': 'get{}Coverage'.format(k.capitalize()),
|
|
'parameters': [
|
|
items_f,
|
|
],
|
|
'responses': {
|
|
'200': {'$ref': '{}#/components/responses/Features'.format(OPENAPI_YAML['oapif'])}, # noqa
|
|
'400': {'$ref': '{}#/components/responses/InvalidParameter'.format(OPENAPI_YAML['oapif'])}, # noqa
|
|
'404': {'$ref': '{}#/components/responses/NotFound'.format(OPENAPI_YAML['oapif'])}, # noqa
|
|
'500': {'$ref': '{}#/components/responses/ServerError'.format(OPENAPI_YAML['oapif'])} # noqa
|
|
}
|
|
}
|
|
}
|
|
|
|
coverage_domainset_path = '{}/coverage/domainset'.format(
|
|
collection_name_path)
|
|
|
|
paths[coverage_domainset_path] = {
|
|
'get': {
|
|
'summary': 'Get {} coverage domain set'.format(v['title']),
|
|
'description': v['description'],
|
|
'tags': [k],
|
|
'operationId': 'get{}CoverageDomainSet'.format(
|
|
k.capitalize()),
|
|
'parameters': [
|
|
items_f,
|
|
],
|
|
'responses': {
|
|
'200': {'$ref': '{}/schemas/cis_1.1/domainSet.yaml'.format(OPENAPI_YAML['oacov'])}, # noqa
|
|
'400': {'$ref': '{}#/components/responses/InvalidParameter'.format(OPENAPI_YAML['oapif'])}, # noqa
|
|
'404': {'$ref': '{}#/components/responses/NotFound'.format(OPENAPI_YAML['oapif'])}, # noqa
|
|
'500': {'$ref': '{}#/components/responses/ServerError'.format(OPENAPI_YAML['oapif'])} # noqa
|
|
}
|
|
}
|
|
}
|
|
|
|
coverage_rangetype_path = '{}/coverage/rangetype'.format(
|
|
collection_name_path)
|
|
|
|
paths[coverage_rangetype_path] = {
|
|
'get': {
|
|
'summary': 'Get {} coverage range type'.format(v['title']),
|
|
'description': v['description'],
|
|
'tags': [k],
|
|
'operationId': 'get{}CoverageRangeType'.format(
|
|
k.capitalize()),
|
|
'parameters': [
|
|
items_f,
|
|
],
|
|
'responses': {
|
|
'200': {'$ref': '{}/schemas/cis_1.1/rangeType.yaml'.format(OPENAPI_YAML['oacov'])}, # noqa
|
|
'400': {'$ref': '{}#/components/responses/InvalidParameter'.format(OPENAPI_YAML['oapif'])}, # noqa
|
|
'404': {'$ref': '{}#/components/responses/NotFound'.format(OPENAPI_YAML['oapif'])}, # noqa
|
|
'500': {'$ref': '{}#/components/responses/ServerError'.format(OPENAPI_YAML['oapif'])} # noqa
|
|
}
|
|
}
|
|
}
|
|
except ProviderTypeError:
|
|
LOGGER.debug('collection is not coverage based')
|
|
|
|
LOGGER.debug('setting up STAC')
|
|
stac_collections = filter_dict_by_key_value(cfg['resources'],
|
|
'type', 'stac-collection')
|
|
if stac_collections:
|
|
paths['/stac'] = {
|
|
'get': {
|
|
'summary': 'SpatioTemporal Asset Catalog',
|
|
'description': 'SpatioTemporal Asset Catalog',
|
|
'tags': ['stac'],
|
|
'operationId': 'getStacCatalog',
|
|
'parameters': [],
|
|
'responses': {
|
|
'200': {'$ref': '#/components/responses/200'},
|
|
'default': {'$ref': '#/components/responses/default'}
|
|
}
|
|
}
|
|
}
|
|
|
|
LOGGER.debug('setting up processes')
|
|
processes = filter_dict_by_key_value(cfg['resources'], 'type', 'process')
|
|
|
|
if processes:
|
|
paths['/processes'] = {
|
|
'get': {
|
|
'summary': 'Processes',
|
|
'description': 'Processes',
|
|
'tags': ['server'],
|
|
'operationId': 'getProcesses',
|
|
'parameters': [
|
|
{'$ref': '#/components/parameters/f'}
|
|
],
|
|
'responses': {
|
|
'200': {'$ref': '{}/responses/ProcessList.yaml'.format(OPENAPI_YAML['oapip'])}, # noqa
|
|
'default': {'$ref': '#/components/responses/default'}
|
|
}
|
|
}
|
|
}
|
|
|
|
for k, v in processes.items():
|
|
p = load_plugin('process', v['processor'])
|
|
|
|
process_name_path = '/processes/{}'.format(k)
|
|
tag = {
|
|
'name': k,
|
|
'description': p.metadata['description'],
|
|
'externalDocs': {}
|
|
}
|
|
for link in p.metadata['links']:
|
|
if link['type'] == 'information':
|
|
tag['externalDocs']['description'] = link['type']
|
|
tag['externalDocs']['url'] = link['url']
|
|
break
|
|
if len(tag['externalDocs']) == 0:
|
|
del tag['externalDocs']
|
|
|
|
oas['tags'].append(tag)
|
|
|
|
paths[process_name_path] = {
|
|
'get': {
|
|
'summary': 'Get process metadata',
|
|
'description': p.metadata['description'],
|
|
'tags': [k],
|
|
'operationId': 'describe{}Process'.format(k.capitalize()),
|
|
'parameters': [
|
|
{'$ref': '#/components/parameters/f'}
|
|
],
|
|
'responses': {
|
|
'200': {'$ref': '#/components/responses/200'},
|
|
'default': {'$ref': '#/components/responses/default'}
|
|
}
|
|
}
|
|
}
|
|
paths['{}/jobs'.format(process_name_path)] = {
|
|
'get': {
|
|
'summary': 'Retrieve job list for process',
|
|
'description': p.metadata['description'],
|
|
'tags': [k],
|
|
'operationId': 'get{}Jobs'.format(k.capitalize()),
|
|
'responses': {
|
|
'200': {'$ref': '#/components/responses/200'},
|
|
'404': {'$ref': '{}/responses/NotFound.yaml'.format(OPENAPI_YAML['oapip'])}, # noqa
|
|
'default': {'$ref': '#/components/responses/default'}
|
|
}
|
|
},
|
|
'post': {
|
|
'summary': 'Process {} execution'.format(
|
|
p.metadata['title']),
|
|
'description': p.metadata['description'],
|
|
'tags': [k],
|
|
'operationId': 'execute{}Job'.format(k.capitalize()),
|
|
'parameters': [{
|
|
'name': 'response',
|
|
'in': 'query',
|
|
'description': 'Response type',
|
|
'required': False,
|
|
'schema': {
|
|
'type': 'string',
|
|
'enum': ['raw', 'document'],
|
|
'default': 'document'
|
|
}
|
|
}],
|
|
'responses': {
|
|
'200': {'$ref': '#/components/responses/200'},
|
|
'201': {'$ref': '{}/responses/ExecuteAsync.yaml'.format(OPENAPI_YAML['oapip'])}, # noqa
|
|
'404': {'$ref': '{}/responses/NotFound.yaml'.format(OPENAPI_YAML['oapip'])}, # noqa
|
|
'500': {'$ref': '{}/responses/ServerError.yaml'.format(OPENAPI_YAML['oapip'])}, # noqa
|
|
'default': {'$ref': '#/components/responses/default'}
|
|
},
|
|
'requestBody': {
|
|
'description': 'Mandatory execute request JSON',
|
|
'required': True,
|
|
'content': {
|
|
'application/json': {
|
|
'schema': {
|
|
'$ref': '{}/schemas/execute.yaml'.format(OPENAPI_YAML['oapip']) # noqa
|
|
}
|
|
}
|
|
}
|
|
}
|
|
}
|
|
}
|
|
if 'example' in p.metadata:
|
|
paths['{}/jobs'.format(process_name_path)]['post']['requestBody']['content']['application/json']['example'] = p.metadata['example'] # noqa
|
|
|
|
oas['paths'] = paths
|
|
|
|
return oas
|
|
|
|
|
|
def get_oas(cfg, version='3.0'):
|
|
"""
|
|
Stub to generate OpenAPI Document
|
|
|
|
:param cfg: configuration object
|
|
:param version: version of OpenAPI (default 3.0)
|
|
|
|
:returns: OpenAPI definition YAML dict
|
|
"""
|
|
|
|
if version == '3.0':
|
|
return get_oas_30(cfg)
|
|
else:
|
|
raise RuntimeError('OpenAPI version not supported')
|
|
|
|
|
|
@click.command('generate-openapi-document')
|
|
@click.pass_context
|
|
@click.option('--config', '-c', 'config_file', help='configuration file')
|
|
def generate_openapi_document(ctx, config_file):
|
|
"""Generate OpenAPI Document"""
|
|
|
|
if config_file is None:
|
|
raise click.ClickException('--config/-c required')
|
|
with open(config_file) as ff:
|
|
s = yaml_load(ff)
|
|
click.echo(yaml.safe_dump(get_oas(s), default_flow_style=False))
|