Commit Graph

68 Commits

Author SHA1 Message Date
Mathieu Tachon 70804d22fa feat(OGRProvider): allow to use 'geom_field' in the config for OGR pr… (#1141)
* feat(OGRProvider): allow to use 'geom_field' in the config for OGR provider

* docs: show an example of using OGR for publishing data from a PostGIS database

* fix: does not check for empty geometry in this PR

* docs: add back ESRIJSON source_type
2023-02-14 19:29:09 -05:00
Tom Kralidis a15f9f2b52 add note for running WSGI and a virtualenv (thanks Australia BOM) (#1131)
* add note for running WSGI and a virtualenv (thanks Australia BOM)

* docs sweep

* fix
2023-02-03 20:50:21 -05:00
KoalaGeo ef5cab1310 Add postgres properties filter example to documentation & k8s installation notice (#1032)
* Add postgres properties filter example

* Add note for kubenetes use

* requested changes

* Update ogcapi-features.rst

* Update ogcapi-features.rst

* Update installation.rst

---------

Co-authored-by: Tom Kralidis <tomkralidis@gmail.com>
2023-02-03 20:30:33 -05:00
Tom Kralidis d6ad4f8724 upgrade Elasticsearch support to 8 (#1017)
* upgrade Elasticsearch support to version 8

* Update ogcapi-features.rst
2023-02-03 08:45:03 -05:00
Tom Kralidis f26582e4ce add examples in docs 2023-01-23 09:28:05 -05:00
Jo 111cfa5a98 - update docs with example of configuration for rendering pg_tileserv vector tiles (#1058) 2022-12-04 07:06:22 -05:00
Tom Kralidis c3b0e7868e minor updates to #1040 (#1054)
* minor updates to #1040
* s/crs/bbox-crs
* write status to stdout if --output-file is used
2022-12-02 09:58:45 +02:00
Jo 85a4984bbe Add Support for a generic url template, for publishing vector tiles as OGC API Tiles (#1050)
* - Added support to read from a generic url template as vector tile backend.

* - Add support for not rendering the tileset metadata

* - added support for z/y/x vector tile layers

* - fixed formatting issues

* - refactored code to use get_layer function, everywhere we need to parse username
- added a couple of debug statements, to make sure we are getting the layer name
correctly
- added an error for url templates that follow a schema, which is not supported yet

* - Added documentation for tiles provider, to show how to read a generic url

* - fixed formatting issues

* - added example of ES vector tiles in the docker-config of elasticsearch

Co-authored-by: doublebyte1 <info@doublebyte.net>
2022-12-01 08:34:16 -05:00
Tom Kralidis 608fba5664 add support for OAMaps 🗺️ (#668) 2022-12-01 11:55:46 +02:00
Tom Kralidis af72c79267 add requirements note for providers (#1040) (#1041) 2022-11-23 08:03:44 -05:00
Tom Kralidis db8fae61eb minor fixes following #964 (#1030) 2022-10-29 02:41:45 -04:00
John A Stevenson 644281359a Add CQL to PostgreSQL provider (via pygeofilter and sqlalchemy) (#964)
* Add pygeofilter, unpin psycopg2

* Add pygeofilter SQLAlchemy query demo

* Add note about primary key

* Add todos to script

* Make script generic

* Add (commented out) PostgreSQL provider hotosm_bdi_waterways to config

* Update to use local test database

* Return result as dictionary

* Pass GEOM_FIELD as variable

* Add offset and limt, fix two names

* Implement order by

* Use function for cql query

* Add cql query block to query and test

* Link up to db engine

* Convert WKB geometry to GeoJSON

* Add shapely as explicit dependency

* Add tests for CQL queries

* Add test using CROSSES with LINESTRING

* Uncomment Docker PostGIS test layer

* First pass at wiring up API

The CQL is read from the request but the parser fails to convert to
AST.

* Turn logging to DEBUG

Example query
http://localhost:5000/collections/hot_osm_waterways/items?cql=%27osm_id%20BETWEEN%2080800000%20AND%2080900000%20AND%20name%20IS%20NULL%27

* Create dedicated pygeoapi-config.yml for testing PostgreSQL

* Add test for PostgreSQL CQL

* Return 400 for bad CQL

* Tidy up old files

* Bring API error type tests together

* Only reflect the table of interest

* Add pygeofilter to requirements

* Remove local setup_env.sh from .gitignore

* Remove lark exception handling

* Remove lark codes from tests, docstring change

* Split cql test into good and error

* Rename cql parameter to filter

* Add optional filter-lang parameter with test

* Initial changes

* Rename cql text parser

* Use CQL-JSON POST for PostgreSQL query

* Refactor to get data early and handle errors

* Add error tests for CQL-JSON PostgreSQL

* Add tests for prev/next and provider instantiation

* As filter-lang is set the block in not needed

* Clarify test fixtures

* Use filterq only in all CQL calls

* Make engine and table_model attributes of provider

* Handle different instantiation failures

* Use SQLAlchemy for get_fields()

* Minor doc edits

* Use SQLAlchemy for get()

* Simplify _sqlalchemy_to_feature

* Store database parameters in dedicated function

* Strip out non-SQLAlchemy code

* Add draft query() based on CQL filters

* Add property filtering to query()

* Implement select_properties and skip_geometry

* Implement bbox filter

* Implement properties subset defined in config

* Clean up materialized view test

We only need to test the fields that are present to be sure that the
view has been accessed, so other checks have been removed.

* Flake8 fixes and tidy up

* Add combined test for CQL with bbox and properties

* Create sessions directly where required

* Add Engine store to allow connection reuse

* Replace cql_ast with filterq

* Tidy up tests by using fixture for api

* Add authors

* Use Session() as context manager

A session requires a connection to the database, as provided by the
SQLAlchemy engine.  When the session goes out of scope, e.g. at exit
from the function when it was used, it should be garbage collected and
the connection freed.  However, during load testing it was found that
this wasn't happening.  This commit uses a context manager pattern to
start the session, which ensures that the session is closed at the end
of the `with` block.

* Return fields type as {'type': ...}

* Cache the table_model with the engine

Generating the table_model by "reflecting" the database is expensive but
the resulting model doesn't change.  If we cache the table_model with
the engine we save on a round-trip to the database and speed up response
time.

* Use separate stores for Engine and table_models

Using a combined store based on both engine and table_model meant that
a pygeoapi serving multiple tables on the same database would maintain
a connection pool for each table.  This could eventually saturate the
number of available connections.  This commit separates the store into
two parts.

* Update documentation with example

* Manage or post items based on POST content type

* ghcr build action

* only ghcr job

* run criteria edit

* Update README.md

* job = main

* remove success requirememt

* add tag

* tags: bgs-cql

* Update main.yml

* Update README.md

* remove binary

* update

* Update actions to latest versions

* Dockerfile refactor

* Dockerfile refactor

* restore dockerhub

* fix pygeoif version

* # 3.6 test & dockerhub ref

* Pin pygeoif version to less than 1

* Replace psycopg-binary with psycopg

* Split Docker build into sections

* Pin click version >7,<=8

* Add further cql examples

* Update workflows to match GeoPython repo

* update flake python version

* Unquote PostgreSQL column names

* Update container workflow uses versions

* flake8 use python version 3.7

* Use pre ping to get db connection

* Test that properties are set in provider

* Amendments as requested by @tomkralidis

* Correction

* Fix reviewed changes in api code

Co-authored-by: Colin Blackburn <colb@bgs.ac.uk>
Co-authored-by: KoalaGeo <eddlewis85@gmail.com>
Co-authored-by: Edd <edlew@bgs.ac.uk>
Co-authored-by: Colin Blackburn <ximenesuk@users.noreply.github.com>
2022-10-29 02:15:31 -04:00
Tom Kralidis 66f2d86e83 update refs, add doc 2022-10-14 19:02:16 -04:00
Tom Kralidis faa00e7c92 add support for API transactions (#984)
* add support for API transactions (#107)

* update Django views

* fix Starlette refs

* isolate  metadata fields

* fix flake8

* add root link relations to collection and item endpoints

* fix tests

* fix tests

* fix tests

* fix tests
2022-09-15 11:59:06 -04:00
Tom Kralidis 199a1fc612 update Django integration (#971)
* update Django integration

* address PR comments
2022-08-30 22:41:48 +02:00
Benjamin Webb 46f213bff5 Add Socrata provider for OGC API - Features (#955) 2022-08-15 09:44:25 -04:00
Benjamin Webb 5a6fdd2bed Add ESRI Service provider for OGC API - Features (#954) 2022-08-15 09:44:13 -04:00
Jo b6bf67b8c8 - Added overview for mongo provider in the documentation (#940) 2022-07-21 20:29:39 -04:00
Tom Kralidis 08f3380b6f update hidden resources concept (#934) 2022-07-11 07:45:10 -04:00
Tom Kralidis 2d85eb2ac6 add support for non-advertised resources (#927) 2022-07-07 06:32:43 -04:00
Tom Kralidis 356fe1280c add skip_geometry to remaining feature providers (#887)
* skip geometry for SQLite/GPKG backends (#886)

* simplify GKPG

* add for remaining providers, add to doc
2022-04-19 13:44:56 -04:00
Tom Kralidis 09ad6f8fce Hierarchical collections (#885)
* add support for hierarchical collections

* fix JSON rendering in docs

* fix JSON rendering in docs

* fix tests

* update docs

* update HTML templates with collections path

* fix template error

* add test
2022-04-16 18:26:55 -04:00
Tom Kralidis f17c6936a0 OACov: change coverage range-subset to properties, update conformance classes (#870)
* OACov: change coverage range-subset to properties, update conformance classes

* fix conformance tests
2022-03-10 16:23:49 -05:00
Tom Kralidis 5d0dbd0857 fix docs 2022-03-08 16:05:08 -05:00
ychoquet bd2177674c Creation of a STAC HATEOAS Provider. (#857) 2022-02-23 17:27:43 -05:00
KoalaGeo 23fc76b6ff Update ogcapi-features.rst (#847) 2022-01-29 17:37:31 -05:00
Tom Kralidis 300be49a58 allow providers to specify custom filename for query output (#841) 2022-01-15 07:30:20 -05:00
Tom Kralidis 5d072f4efa OAProc updates (#840)
* update OAProc jobs as a top-level resource (#838)

* update config

* update copyright year
2022-01-04 08:43:39 -05:00
Tom Kralidis 05dfebd7e4 fix list formatting in docs 2021-12-08 21:59:26 -05:00
Tom Kralidis fca8974432 [OACov] rename rangeSubset to range-subset for coverage queries (#816) 2021-11-19 09:25:13 -05:00
Tom Kralidis 16648ecb48 add queryable support for CSV and GeoJSON providers (#555) (#786) 2021-09-26 20:25:27 -04:00
Tom Kralidis 44624e8e87 docs: make CSV table more readable (#785) 2021-09-26 07:10:09 -04:00
Benjamin Webb a54fd6a908 Add postgres provider query parameters (#784)
* Add sortby, skip_geometry, and select_properties

* some pytest fixes

* Update main.yml

* Update main.yml

* fix geom in response feature

* more pytest fixes

* Update postgresql.py

* Update test_postgresql_provider.py

* Update test_postgresql_provider.py

* Add to docs, fix pytest

* fix for when when 'name' = None

* Update test_postgresql_provider.py

* Update test_postgresql_provider.py

* Remove optional comparator

* use secrets with default password

* Add secret to load postgres data
2021-09-25 07:03:38 -04:00
Tom Kralidis 9d920901b5 update OAProc execute handling (#754)
* fix OAProc default output to raw

* control outputs list from api machinery

* fix tests
2021-08-18 15:28:55 -04:00
Tom Kralidis 00a08e05ba update OAProc content models (#735) 2021-07-22 15:13:09 +02:00
Francesco Bartoli bb4cd0bf69 Add cql-json support for ES (#723)
Fix starlette event loop


Fix starlette event loop


Fix starlette event loop


Fix starlette event loop


Fix provider regression


Make method public


Make method public


Move function to the helpers utility


Add the CQL lifecycle for development


Add CQL docs


Fix flake8


Isolate import for starlette codepath
2021-07-21 21:00:14 -04:00
Benjamin Webb 8f8d19c5f8 Sensorthings API Provider (#721)
* Create sensorthings.py

* Update plugin.py

* Add files via upload

* Update sensorthings.py

* Add files via upload

* Update sensorthings.py

* Update sensorthings.py

* Update sensorthings.py

* Update sensorthings.py

* Update sensorthings BRGM Endpoint

* Clean Examples

* Cleaned sensorthings config

* add bbox and datetime query params

Added optional intralinking between STA entities

* add pytest for sta provider

* add sta pytest to workflow

* improve versatility of intralink and uri

* Update Datastreams geometry provider

* Update iow.sta.pygeoapi.config.yml

* faster hits using sta $count

* fix flake8

* added sta provider for github actions

* type in main.yml

* Update main.yml

* Update main.yml

* rename tests/data/datastreams.json

* Update main.yml

* Update load_sta_data.py

* Update load_sta_data.py

* Update load_sta_data.py

* Update load_sta_data.py

* Update load_sta_data.py

* Fix sta pytest

* fix flake8

* Update docs

* Update test_sensorthings__provider.py

* Merge various fixes from sta-patch-1

* force sorting

* Move STA data to remote host

* Clarify use of the intralink field

* rename test_sensorthings_provider.py

* Add Readme.md and switch to docker-compose

* Sensorthings -> SensorThings
2021-07-06 17:04:45 -04:00
Tom Kralidis 89eff49ce0 add support for configuration schema and validation (#553) (#719)
* add support for configuration schema and validation (#553)

* rename types

* minor doc fix

* update i18n regexes

* make openapi click options required arguments
2021-07-06 17:01:05 -04:00
Tom Kralidis 2744a24e6a fix ESRI Shapefile STAC publishing (#561) (#681) 2021-05-18 06:46:36 -04:00
Tom Kralidis 951a1fb486 implement OGC EDR API (#658)
* implement OGC EDR API
* add docs/tests
* fix tests
2021-03-15 17:37:40 +02:00
Tom Kralidis 9785c9afeb update docs 2021-02-21 19:45:22 -05:00
paul van genuchten 1bd1ad509b add contact and url's to record (#636) 2021-02-21 16:18:35 -05:00
Tom Kralidis 0c1d98e868 implement OGC API - Records (#404) (#631) 2021-02-18 17:56:23 -05:00
Tom Kralidis e8ae03c5de update STAC MCF support/dependencies/docs (#618)
* update STAC MCF support/dependencies/docs

* update STAC MCF support/dependencies/docs
2021-02-13 08:28:36 -05:00
Tom Kralidis 10f9a6a9fd update OpenAPI repo names 2021-02-12 09:41:49 -05:00
paul van genuchten 0787955337 add docs for ogr provider (#610) 2021-01-27 22:22:02 -05:00
Tom Kralidis b96028bee7 Update ogcapi-features.rst 2021-01-18 16:46:56 -05:00
Richard Law 60202129ec implement processing manager (#365)
* add process manager

* process manager updating

* control connectivity from inside manager

* missing method on execute_process function signature

* adds tinydb depenedency for requirements-provider

* adds some processes tests

* process manager under server config, not a process

* additional html rendering for jobs and processes

* fixes typo in docstring

* complete html templating for jobs and processes

* considers timezone when formatting processing start/end datetimes

* expanded locales; locale and tz environment variables

* makes environment TZ a global from pygeoapi/__init__.py

* don't redefine built-in format

* adds placeholder values in process form if given as examples

* placeholder in form handles null example

* changes to process progress update

* updates and changes to processing web UI

* adds python3-distutils dep, and env changes for TZs and locales

* adds tinydb dependency for processes

* Adds libpq-dev and related deps for processing - should eventually be reconciled

* minor margin change

* fix bug in postJob.js that prevented results from displaying

* move process elements around to economise on space

* adds second, complex process

* post data may be bytes

* make external process example

* adds redis process manager (may be moved to third-party plugin eventually)

* reintroduce default async processing; refactoring managers; improving sync/async processing ui

* throw pygeoapi ManagerExecuteError, not redis exception

* adds test for async-execute

* restores original test host

* separates async execute handler function

* adds support for file uploads as processing inputs

* adds endpoint for file download as process output

* naming consistency

* Fix job submission form in case server url is relative (#549)

`new URL()` fails if the first argument isn't a complete url

* Implement job deletion in UI, api and tinydb

* Also allow deletion from job list

The UI could be fancier by reloading the page or just removing the
deleted job right away, but I don't want to start building that now.

* Delete output file when deleting a job

* typo in test case

* move delete button in job view

* remove Dockerfile changes (cf #470)

* removes some docs/source*.rst absent in master

* fixes whitespace

* fixes pip installs

* removes more locale-specific content, cf 70

* fixes duplicate app following merge

* removes redis as default plugin

* removes ENV_TZ, cf #407

* fix typo

* fixes syntax error

* process execution test cleanup

* Fix format detection in execute_process (#589)

Before, html was always selected.

* remove db files in code directories, fix flake8, specific functionality

* remove interactive capabilities in lieu of Swagger

* Add basic openapi documentation for job detail endpoint (#590)

It's somewhat superficial still, e.g. jobId is missing as
proper parameter in the UI.

* Show elapsed time for currently running jobs (#591)

* flake8, jobs workflow

* update docs, DB path in test config

* more code cleanup

* manager workflow cleanup

* add default dummy manager

* update docs

* fix routes

* fixed per comments

* fix per comments

* fix per comments

* fix travis

* simply describe process logic

* simplify describe process logic

Co-authored-by: Tom Kralidis <tomkralidis@gmail.com>
Co-authored-by: Jorge de Jesus <jorge.jesus@gmail.com>
Co-authored-by: totycro <bernhard.mallinger@eox.at>
Co-authored-by: Richard Law <richard.law@cartoncloud.com.au>
2020-12-22 06:53:31 -05:00
Tom Kralidis c043405508 add support for propertyname and skipGeometry parameters (#51) (#565)
* add support for propertyname and skipGeometry parameters (#51)

* fix tests

* fix tests

* fix tests

* fix vars

* add tests
2020-11-02 10:07:37 +01:00
Tom Kralidis 42a3424ae8 add bbox and datetime support to OACov providers (#560) 2020-10-29 16:48:58 -04:00