Commit Graph

73 Commits

Author SHA1 Message Date
Tom Kralidis 83ea3d3959 fix docs 2021-07-06 17:20:23 -04:00
Benjamin Webb 8f8d19c5f8 Sensorthings API Provider (#721)
* Create sensorthings.py

* Update plugin.py

* Add files via upload

* Update sensorthings.py

* Add files via upload

* Update sensorthings.py

* Update sensorthings.py

* Update sensorthings.py

* Update sensorthings.py

* Update sensorthings BRGM Endpoint

* Clean Examples

* Cleaned sensorthings config

* add bbox and datetime query params

Added optional intralinking between STA entities

* add pytest for sta provider

* add sta pytest to workflow

* improve versatility of intralink and uri

* Update Datastreams geometry provider

* Update iow.sta.pygeoapi.config.yml

* faster hits using sta $count

* fix flake8

* added sta provider for github actions

* type in main.yml

* Update main.yml

* Update main.yml

* rename tests/data/datastreams.json

* Update main.yml

* Update load_sta_data.py

* Update load_sta_data.py

* Update load_sta_data.py

* Update load_sta_data.py

* Update load_sta_data.py

* Fix sta pytest

* fix flake8

* Update docs

* Update test_sensorthings__provider.py

* Merge various fixes from sta-patch-1

* force sorting

* Move STA data to remote host

* Clarify use of the intralink field

* rename test_sensorthings_provider.py

* Add Readme.md and switch to docker-compose

* Sensorthings -> SensorThings
2021-07-06 17:04:45 -04:00
Tom Kralidis 89eff49ce0 add support for configuration schema and validation (#553) (#719)
* add support for configuration schema and validation (#553)

* rename types

* minor doc fix

* update i18n regexes

* make openapi click options required arguments
2021-07-06 17:01:05 -04:00
Tom Kralidis 167281ee83 add support for OpenAPI rendering via ReDoc (#414) (#720)
* add support for OpenAPI rendering via ReDoc (#414)

* add support for OpenAPI rendering via ReDoc (#414)
2021-06-30 11:11:57 -04:00
Tom Kralidis 7ecac02693 add support for OpenAPI validation (#717) (#718)
* add support for OpenAPI validation (#717)

* update copyright years

* fix ES ref

* update CLI
2021-06-29 08:48:22 -04:00
Kyle Onda 37b1e9553b add geometry representations for json-ld output format (#689)
* Update linked_data.py

* Update linked_data.py

Added schema:geoShape to geojsonld = false

* Update linked_data.py

* Update linked_data.py for rebasing

* Update linked_data.py

* Update configuration.rst

* Update linked_data.py for geosparql geometry

* Add files via upload

* Update test_api.py

* Update test_api.py

* Update linked_data.py logic

* Add pytest for more geometry types

* Update test_util.py

* rename geojson2geojsonld, separated geom2schemageo

* Add pytest for polygon and linestring

* Update expanation of uri_field

Co-authored-by: Benjamin Webb <40066515+webb-ben@users.noreply.github.com>
Co-authored-by: Benjamin Webb <bmwebb20@colby.edu>
2021-06-17 19:00:35 -04:00
Sander Schaminee 023f24d26b Multilingual support (alternative) (#664)
* Created localization (l10n) module + tests. Added l10n support to API and plugins (wip).

* Big refactor:

* All routed API methods are now decorated by @pre_process (consistency) and no longer have a headers+format argument but a request argument (**kwargs also removed)
* The pre_process decorator turns an incoming Flask/Starlette request into a generic APIRequest instance
* The new APIRequest class extracts all relevant info (params, data, locale, etc.) from the request and exposes them as properties
* Removed a lot of boilerplate (i.e. format checking) and wrapped that into methods
* Updated server-specific API calls in each route method (pass entire request object, not headers and query params)

* Several improvements and fixes:

* Updated OpenAPI page with "l" query param
* Added example translations (metadata)
* Changed plugin signature: added explicit locale attribute (instead of **kwargs)
* Moved locale processing to get_plugin_locale() function in l10n module
* API should pass raw requested locale to plugins, locale should always be set
* Fixed API tests and added APIRequest tests
* Prepared utils.py for Jinja2 i18n extension
* Rebased on commit b40297a8 and fixed compatibility with #661 and #662

* Updated documentation for language support

* Rebased and fixed compatibility with PR #658:

* Fixed EDR provider signature (added locale)
* Fixed EDR API routes and query function (and improved parameter-name handling)
* Fixed EDR tests

* Translate entire config in render_j2_template for requested locale:

* Added new translate_dict function to l10n module (+ tests)
* Updated all render_j2_template calls with locale parameter
* Updated pygeoapi-test-config.yml with some language structs

* Minor improvements

* support both 'language' and 'languages' property in server config and provider definitions
* renamed and modified translate_dict() to more generic translate_struct() function (l10n module)
* remove Content-Language header from provider responses if provider has no language support and format is json(ld)
* updated tests

* Leave provider locale handling to API

* Moved code to determine locale from providers to API class (and remove for formatters and processes)
* Removed locale parameter from plugin __init__ signatures
* Removed locale parameter from load_plugin()
* Added **kwargs to provider implementations for get, query, get_metadata, get_coverage_domainset and get_coverage_rangetype method signatures
* Added language=<locale> to all API calls to provider get, query, get_metadata, get_coverage_domainset and get_coverage_rangetype methods

* Use 'lang' instead of 'l' as language query parameter

* Updated Open API
* Updated documentation
* Fixed tests

* Implemented requested PR changes:

* Added usage examples to the APIRequest docstring
* Removed language support from coverage functions
* Updated plugins.rst and language.rst to match new behavior
* Removed language struct from resource links in pygeoapi-config.yml
* Rebased on latest master (fixed test_api.py)

* Rebased and applied fixes:

* Data property in APIRequest now is an awaitable attribute (fixed for Starlette compatibility)
* Named references to 'l' parameter to 'lang'

* Final changes/improvements:

* Make sure that Content-Language is always set;
* Added more tests to ensure that the default language returned is the first configured language (if no language was requested by the user);
* Updated docs;
* Replaced re-occuring strings with constants in api.py;
* Fixed Flake8 checks.

* add missing async to starlette routes (#704)

Co-authored-by: Tom Kralidis <tomkralidis@gmail.com>
2021-06-08 18:46:35 -04:00
Tom Kralidis 46f84a4ed3 migrate to GitHub Actions (#616) (#703) 2021-06-01 17:15:30 -04:00
Tom Kralidis 2744a24e6a fix ESRI Shapefile STAC publishing (#561) (#681) 2021-05-18 06:46:36 -04:00
Kyle Onda 589df6370a Support for PIDs and (non-Geo)JSON-LD (#676)
* Update api.py for uri_field

* Update linked_data.py

Update to meet the needs of https://github.com/internetofwater/geoconnex.us/issues/93

* Add uri_field to base.py provider

* Update index.html

Push uri-like field to front of list in collections/items

* Update api.py

Allow html files to handle uri_field

* Add trailing / to schema context

* Add uri_field to collections index page

* Add uri_field to collections item html page

* Update api.py

* Update configuration.rst

* fixed spelling

* Update configuration.rst

* Update configuration.rst

* Update configuration.rst

* Update sqlite.py

* Update linked_data.py

* Update api.py

* Revert 'id' cast to string

* Update configuration.rst

* Update linked_data.py

* Update api.py

* Update linked_data.py

* Update configuration.rst for json boolean

Co-authored-by: Benjamin Webb <40066515+webb-ben@users.noreply.github.com>
2021-04-27 19:44:19 -04:00
Angelos Tzotsos c55e1cf452 back to dev 2021-03-18 18:01:10 +02:00
Angelos Tzotsos 837847e85d update release version 2021-03-18 17:59:10 +02:00
Angelos Tzotsos 50fcfdf047 Back to dev 2021-03-16 18:40:48 +02:00
Angelos Tzotsos f978d0a1f6 update release version 2021-03-16 18:06:56 +02:00
Tom Kralidis 951a1fb486 implement OGC EDR API (#658)
* implement OGC EDR API
* add docs/tests
* fix tests
2021-03-15 17:37:40 +02:00
Tom Kralidis 2063c69872 add support for OpenAPI document as JSON (#657) 2021-03-12 16:47:01 -05:00
Tom Kralidis e0003b066b update queryables response 2021-02-25 22:26:25 +01:00
Tom Kralidis 9785c9afeb update docs 2021-02-21 19:45:22 -05:00
paul van genuchten 1bd1ad509b add contact and url's to record (#636) 2021-02-21 16:18:35 -05:00
Tom Kralidis 0c1d98e868 implement OGC API - Records (#404) (#631) 2021-02-18 17:56:23 -05:00
paul van genuchten 96675af970 a proposal for #133 (#608)
indicate which field to use as label for the item
2021-02-18 06:12:40 -05:00
Tom Kralidis e8ae03c5de update STAC MCF support/dependencies/docs (#618)
* update STAC MCF support/dependencies/docs

* update STAC MCF support/dependencies/docs
2021-02-13 08:28:36 -05:00
Tom Kralidis 10f9a6a9fd update OpenAPI repo names 2021-02-12 09:41:49 -05:00
paul van genuchten 0787955337 add docs for ogr provider (#610) 2021-01-27 22:22:02 -05:00
Tom Kralidis b96028bee7 Update ogcapi-features.rst 2021-01-18 16:46:56 -05:00
Tom Kralidis 3f4ce49939 add featured templates section to docs 2021-01-13 18:37:08 -05:00
Tom Kralidis 80d76b2133 update copyright year 2021-01-13 06:48:35 -05:00
Tom Kralidis 40351833f7 add Featured plugins section to docs 2021-01-13 06:47:55 -05:00
Tom Kralidis fc6fd9d86f fallback to default HTML template if custom template does not exist (#604)
* fallback to default HTML template if custom template does not exist

* add docs
2021-01-11 15:15:47 -05:00
Richard Law 60202129ec implement processing manager (#365)
* add process manager

* process manager updating

* control connectivity from inside manager

* missing method on execute_process function signature

* adds tinydb depenedency for requirements-provider

* adds some processes tests

* process manager under server config, not a process

* additional html rendering for jobs and processes

* fixes typo in docstring

* complete html templating for jobs and processes

* considers timezone when formatting processing start/end datetimes

* expanded locales; locale and tz environment variables

* makes environment TZ a global from pygeoapi/__init__.py

* don't redefine built-in format

* adds placeholder values in process form if given as examples

* placeholder in form handles null example

* changes to process progress update

* updates and changes to processing web UI

* adds python3-distutils dep, and env changes for TZs and locales

* adds tinydb dependency for processes

* Adds libpq-dev and related deps for processing - should eventually be reconciled

* minor margin change

* fix bug in postJob.js that prevented results from displaying

* move process elements around to economise on space

* adds second, complex process

* post data may be bytes

* make external process example

* adds redis process manager (may be moved to third-party plugin eventually)

* reintroduce default async processing; refactoring managers; improving sync/async processing ui

* throw pygeoapi ManagerExecuteError, not redis exception

* adds test for async-execute

* restores original test host

* separates async execute handler function

* adds support for file uploads as processing inputs

* adds endpoint for file download as process output

* naming consistency

* Fix job submission form in case server url is relative (#549)

`new URL()` fails if the first argument isn't a complete url

* Implement job deletion in UI, api and tinydb

* Also allow deletion from job list

The UI could be fancier by reloading the page or just removing the
deleted job right away, but I don't want to start building that now.

* Delete output file when deleting a job

* typo in test case

* move delete button in job view

* remove Dockerfile changes (cf #470)

* removes some docs/source*.rst absent in master

* fixes whitespace

* fixes pip installs

* removes more locale-specific content, cf 70

* fixes duplicate app following merge

* removes redis as default plugin

* removes ENV_TZ, cf #407

* fix typo

* fixes syntax error

* process execution test cleanup

* Fix format detection in execute_process (#589)

Before, html was always selected.

* remove db files in code directories, fix flake8, specific functionality

* remove interactive capabilities in lieu of Swagger

* Add basic openapi documentation for job detail endpoint (#590)

It's somewhat superficial still, e.g. jobId is missing as
proper parameter in the UI.

* Show elapsed time for currently running jobs (#591)

* flake8, jobs workflow

* update docs, DB path in test config

* more code cleanup

* manager workflow cleanup

* add default dummy manager

* update docs

* fix routes

* fixed per comments

* fix per comments

* fix per comments

* fix travis

* simply describe process logic

* simplify describe process logic

Co-authored-by: Tom Kralidis <tomkralidis@gmail.com>
Co-authored-by: Jorge de Jesus <jorge.jesus@gmail.com>
Co-authored-by: totycro <bernhard.mallinger@eox.at>
Co-authored-by: Richard Law <richard.law@cartoncloud.com.au>
2020-12-22 06:53:31 -05:00
Paul Weidner 48d00d67d5 Update example vector provider plugin query arguments. (#578) 2020-11-22 22:17:14 -05:00
Angelos Tzotsos 9ca7f9b819 back to dev 2020-11-19 17:57:53 +02:00
Angelos Tzotsos 2228e6e7f7 update release version 2020-11-19 17:33:09 +02:00
Tom Kralidis c043405508 add support for propertyname and skipGeometry parameters (#51) (#565)
* add support for propertyname and skipGeometry parameters (#51)

* fix tests

* fix tests

* fix tests

* fix vars

* add tests
2020-11-02 10:07:37 +01:00
Tom Kralidis 42a3424ae8 add bbox and datetime support to OACov providers (#560) 2020-10-29 16:48:58 -04:00
Tom Kralidis 6d1dcece0e app mount updates (#548)
* refactor WSGI mounting and add docs

* fix ref

* fix Starlette routing for OACov
2020-09-30 07:07:41 -04:00
Kevin Ngai 90ab772c7c Add templates config yml split into path and static (#523)
- updated configuration.rst doc for templates config
- added docs on HTML templating; dedicated page
- typo fix in configuration.rst
- added debug logging for templates path
- added static config in starlette_app.py
- flake8 fixes
2020-09-29 15:44:00 -04:00
Gregory Petrochenkov 44992caab3 Add zarr to xarray provider (#546)
* Progress

* Add temp directory to zarr zip

* Update readme with zarr data info

* Remove numpy from util.py

* Review revisions

* Fix file system test
2020-09-24 18:02:15 -04:00
Tom Kralidis f36e16d7e9 various fixes (#538)
* fix version output

* sort directory names

* unify tile tests

* fix typo in docs

* set OpenAPI info.version to pygeoapi version, add tiles output format

* align request/response headers, update not found tiles to return 404
2020-09-21 12:37:04 +02:00
Francesco Bartoli 4f52536051 Add tiles ogc api (#419)
* Add ogc api tiles implementation

* Add json response to tiles endpoint

* Return correct json payload

* Fix url generation

* Add vector tile layer with clickable items

* Fix typo

* Fix oafeat collection tiles link

* Add format to metadata link

* Fix almost all flake8 errors

* Fix metadata link

* Add routes to serving tiles

* Refactor tile implementation with an own module

* Add http client for mvt

* Fix visibility of tiles template

* Fix tiles in collection item page

* Change source to data coherently with stac provider

* Fix flake8 errors

* Fix test for conformance classes

* Fix flake8 errors


Fix flake8 errors

* Refactor to align with new configuration structure

* Fix MVT plugin name

* Add openapi tiles path and schemas

* Add ogc api tiles implementation

* Add json response to tiles endpoint

* Return correct json payload

* Fix url generation

* Add vector tile layer with clickable items

* Fix typo

* Fix oafeat collection tiles link

* Add format to metadata link

* Fix almost all flake8 errors

* Fix metadata link

* Add routes to serving tiles

* Refactor tile implementation with an own module

* Add http client for mvt

* Fix visibility of tiles template

* Fix tiles in collection item page

* Change source to data coherently with stac provider

* Fix flake8 errors

* Fix test for conformance classes

* Fix flake8 errors


Fix flake8 errors

* Refactor to align with new configuration structure

* Fix MVT plugin name

* Add openapi tiles path and schemas

* Fix flake errors

* Fix merge and tests

* Add test configuration and data for tiles

* Change mapbox vector tile provider name

* Fix provider inspection and filter

* Fix tiles rendering in collection page

* Add mimetype to the mvt provider

* Fix mimetype

* Rename functions accordingly to singular and plural forms

* Fix tiling schemes in tiles template

* Serve mvt through the pygeoapi route

* Refactor and add test for collection tiles

* Fix test for not being tiles

* Remove httpx dependency

* Fix missing comma

* Fix tests

* Fix flake8

* Add initial metadata implementation

* Fix route with preprocess

* Fix tiles template


Fix tiles template

* Complete tileset api and template

* Fix flake8

* Complete metadata with tilejson response

* Add support for local vector tiles

* Fix flake8

* Fix plugin tile object and provider name

* Add a todo comment

* testing alternate plugin setup, fix some HTML, add OpenAPI endpoint

* remove URI template

* add docs

* Fix failing test

* Fix flake8 error

Co-authored-by: Francesco Bartoli <francesco.bartoli@wfp.org>
Co-authored-by: Tom Kralidis <tomkralidis@gmail.com>
2020-09-20 09:50:40 -04:00
Tom Kralidis 2fb20c59f6 fix coverage query with no parameters (#528)
* fix file dump, update docs

* fix file dump, update docs

* fix file dump, update docs

* support data read by file or network
2020-09-11 15:19:11 -04:00
Tom Kralidis 4d2f229c88 fix rasterio driver output (#527)
* fix rasterio driver output

* fix rasterio driver output

* rename driver
2020-09-10 16:24:29 -04:00
Tom Kralidis daf9b19195 [WIP] various xarray updates (#526)
* various xarray updates

* fix ref

* add support non-numeric axis subsetting, HTTP 204 on no content

* add info on COADS test data
2020-09-10 10:36:51 -04:00
Gregory Petrochenkov 8cb34a587a implement xarray Coverage Provider (#525)
* add support for OGC API - Coverages

* fix coverage CRS ref

* fix ref to OACov schemas for testing

* Halfway progress

* Adjust rangeSubset

* Fixes regarding pr comments

* Version zarr

* Changing dependency order

* Remove zarr

* Add gpkg for tests

Co-authored-by: Tom Kralidis <tomkralidis@gmail.com>
2020-09-09 09:51:34 -04:00
Tom Kralidis 85939109b1 minor docs updates and test cleanups 2020-08-22 10:49:18 -04:00
Tom Kralidis 9cb4e8e961 fix docs 2020-08-21 10:04:03 -04:00
Tom Kralidis 6279ffbee1 fix docs 2020-08-21 10:00:52 -04:00
Tom Kralidis da824fba8f add support for OGC API - Coverages (#110) (#516)
* add support for OGC API - Coverages

* fix coverage CRS ref

* fix ref to OACov schemas for testing

* move spectral testing to after_success

* update docs

* add mask param to rasterio provider
2020-08-21 09:52:17 -04:00
Tom Kralidis efc8492236 update docs to clarify the status of each data provider (#403) 2020-07-29 07:22:52 -04:00
Tom Kralidis 3460567f1f small doc fix 2020-07-13 09:00:30 -04:00